GenSAS Citations

Here are the researchers who have cited GenSAS:

2022

Rico, Y., Lorenzana, G. P., Benítez-Pineda, C. A., & Olukolu, B. A. (2022). Development of Genomic Resources in Mexican Bursera (Section: Bullockia: Burseraceae): Genome Assembly, Annotation, and Marker Discovery for Three Copal Species. Genes, 13(10), 1741.

Nath, O., Fletcher, S. J., Hayward, A., Shaw, L. M., Masouleh, A. K., Furtado, A., ... & Mitter, N. (2022). A haplotype resolved chromosomal level avocado genome allows analysis of novel avocado genes. Horticulture research, 9.

Cossette, M. L., Stewart, D. T., Haghani, A., Zoller, J. A., Shafer, A. B., & Horvath, S. (2022). Epigenetics and island‐mainland divergence in an insectivorous small mammal. Molecular Ecology.

Volenikova, A., Nguyen, P., Davey, P., Sehadova, H., Kludkiewicz, B., Koutecky, P., ... & Zurovec, M. (2022). Genome sequence and silkomics of the spindle ermine moth, Yponomeuta cagnagella, representing the early diverging lineage of the ditrysian Lepidoptera. Communications Biology, 5(1), 1-13.

De Panis, D., Dopazo, H., Bongcam-Rudloff, E., Conesa, A., & Hasson, E. (2022). Transcriptional responses are oriented towards different components of the rearing environment in two Drosophila sibling species. BMC genomics, 23(1), 1-15.

Morrissey, K. A., Sampson, J. M., Rivera, M., Bu, L., Hansen, V. L., Gemmell, N. J., ... & Miller, R. D. (2022). Comparison of reptilian genomes reveals deletions associated with the natural loss of γδ T cells in squamates. The Journal of Immunology, 208(8), 1960-1967.

Reddy, B., Mehta, S., Prakash, G., Sheoran, N., & Kumar, A. (2022). Structured Framework and Genome Analysis of Magnaporthe grisea Inciting Pearl Millet Blast Disease Reveals Versatile Metabolic Pathways, Protein Families, and Virulence Factors. Journal of Fungi, 8(6), 614.

Widanagama, S. D., Freeland, J. R., Xu, X., & Shafer, A. B. (2022). Genome assembly, annotation, and comparative analysis of the cattail Typha latifolia. G3, 12(2), jkab401.

2021

Saud, Z., Hitchings, M. D., & Butt, T. M. (2021). Nanopore sequencing and de novo assembly of a misidentified Camelpox vaccine reveals putative epigenetic modifications and alternate protein signal peptides. Scientific reports, 11(1), 1-13.

Phan, I. Q., Rice, C. A., Craig, J., Noorai, R. E., McDonald, J. R., Subramanian, S., ... & Myler, P. J. (2021). The transcriptome of Balamuthia mandrillaris trophozoites for structure-guided drug design. Scientific Reports, 11(1), 1-13.

Reddy, B., Kumar, A., Mehta, S., Sheoran, N., Chinnusamy, V., & Prakash, G. (2021). Hybrid de novo genome-reassembly reveals new insights on pathways and pathogenicity determinants in rice blast pathogen Magnaporthe oryzae RMg_Dl. Scientific reports, 11(1), 1-17.

Patturaj, M., Munusamy, A., Kannan, N., Kandasamy, U., & Ramasamy, Y. (2021). Chromosome-specific polymorphic SSR markers in tropical eucalypt species using low coverage whole genome sequences: systematic characterization and validation. Genomics & informatics, 19(3).

Wu, K., Cheng, Z. H., Williams, E., Turner, N. T., Ran, D., Li, H., ... & Long, H. (2021). Unexpected discovery of hypermutator phenotype sounds the alarm for quality control strains. Genome biology and evolution, 13(8), evab148.

Weng, Y. M., Francoeur, C. B., Currie, C. R., Kavanaugh, D. H., & Schoville, S. D. (2021). A high‐quality carabid genome assembly provides insights into beetle genome evolution and cold adaptation. Molecular Ecology Resources, accepted.

Barrera-Redondo, J., Sanchez-de La Vega, G., Aguirre-Liguori, J. A., Castellanos-Morales, G., Gutiérrez-Guerrero, Y. T., Aguirre-Dugua, X., ... & Eguiarte, L. E. (2021). The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative. Horticulture Research, 8(1), 1-14.

Huang, Q., Wu, Z. H., Li, W. F., Guo, R., Xu, J. S., Dang, X. Q., ... & Evans, J. D. (2021). Genome and Evolutionary Analysis of Nosema ceranae: A Microsporidian Parasite of Honey Bees. Frontiers in Microbiology, 12, 1303.

Dong, Y., Li, C., Kim, K., Cui, L., & Liu, X. (2021). Genome annotation of disease-causing microorganisms. Briefings in Bioinformatics, 22(2), 845-854.

Kim, W., Jeong, M. H., Yun, S. H., & Hur, J. S. (2021). Transcriptome Analysis Identifies a Gene Cluster for the Biosynthesis of Biruloquinone, a Rare Phenanthraquinone, in a Lichen-Forming Fungus Cladonia macilenta. Journal of Fungi, 7(5), 398.

Navarro-Escalante, L., Hernandez-Hernandez, E. M., Nuñez, J., Acevedo, F. E., Berrio, A., Constantino, L. M., ... & Benavides, P. (2021). A coffee berry borer (Hypothenemus hampei) genome assembly reveals a reduced chemosensory receptor gene repertoire and male-specific genome sequences. Scientific reports, 11(1), 1-17.

Gallardo-Escárate, C., Valenzuela-Muñoz, V., Nuñez-Acuña, G., Valenzuela-Miranda, D., Gonçalves, A. T., Escobar-Sepulveda, H., ... & Warren, W. (2021). Chromosome-scale genome assembly of the sea louse Caligus rogercresseyi by SMRT sequencing and Hi-C analysis. Scientific data, 8(1), 1-12.

Romero, D., López-Ruiz, F. J., & Pérez-Garc, A. (2021). A Hybrid Genome Assembly Resource for Podosphaera xanthii, the Main Causal Agent of Powdery Mildew Disease in Cucurbits. 227 Chitin in Strawberry Cultivation: Foliar Growth and Defense Response Promotion, but Reduced Fruit Yield and Disease Resistance by Nutrient Imbalances C. De Tender, B. Vandecasteele, B. Verstraeten, 319.

Saud, Z., Kortsinoglou, A. M., Kouvelis, V. N., & Butt, T. M. (2021). Telomere length de novo assembly of all 7 chromosomes and mitogenome sequencing of the model entomopathogenic fungus, Metarhizium brunneum, by means of a novel assembly pipeline. BMC genomics, 22(1), 1-15.

Polonio, Á., Díaz-Martínez, L., Fernández-Ortuño, D., de Vicente, A., Romero, D., López-Ruiz, F. J., & Pérez-García, A. (2021). A hybrid genome assembly resource for Podosphaera xanthii, the main causal agent of powdery mildew disease in cucurbits. Molecular Plant-Microbe Interactions, 34(3), 319-324.

Callahan, A. M., Zhebentyayeva, T. N., Humann, J. L., Saski, C. A., Galimba, K. D., Georgi, L. L., ... & Dardick, C. D. (2021). Defining the ‘HoneySweet’insertion event utilizing NextGen sequencing and a de novo genome assembly of plum (Prunus domestica). Horticulture Research, 8(1), 1-13.

2020

Montgomery, J. S., Giacomini, D., Waithaka, B., Lanz, C., Murphy, B. P., Campe, R., ... & Tranel, P. J. (2020). Draft Genomes of Amaranthus tuberculatus, Amaranthus hybridus, and Amaranthus palmeri. Genome biology and evolution, 12(11), 1988-1993.

Gañán, L., White III, R. A., Friesen, M. L., Peever, T. L., & Amiri, A. (2020). A Genome Resource for the Apple Powdery Mildew Pathogen Podosphaera leucotricha. Phytopathology®, 110(11), 1756-1758.

Reinard, T., Londenberg, A., Brychcy, M., Lühmann, K., Behrendt, G., & Wichmann, M. (2020). Editing the Genome of Wolffia australiana. In The Duckweed Genomes (pp. 165-177). Springer, Cham.

2019

Million, C.R., Wijeratne, S., Cassone, B.J., Lee, S., Mian, R., McHale, L.K. and Dorrance, A.E. (2019). Hybrid Genome Assembly of a Major Quantitative Disease Resistance Locus in Soybean Toward Fusarium graminearum. The Plant Genome, 12:180102.

Bodinaku, I., Shaffer, J., Connors, A., Steenwyk, J., Kastman, E., Rokas, A., Robbat, A. and Wolfe, B. (2019). Rapid phenotypic and metabolomic domestication of wild Penicillium molds on cheese. mBio, 10(5), e02445-19.

Dunn, N.A., Unni, D.R., Diesh, C., Munoz-Torres, M., Harris, N.L., Yao, E., Rasche, H., Holmes, I.H., Elsik, C.G. and Lewis, S.E. (2019). Apollo: Democratizing genome annotation. PLoS computational biology, 15(2), p.e1006790.

Dasgupta, M.G., Ulaganathan, K., Dev, S.A. and Balakrishnan, S. (2019). Draft genome of Santalum album L. provides genomic resources for accelerated trait improvement. Tree Genetics & Genomes, 15(3), p.34.

Weitemier, K., Straub, S.C., Fishbein, M., Bailey, C.D., Cronn, R.C. and Liston, A. (2019). A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae. PeerJ, 7.

Sargent, L., Liu, Y., Leung, W., Mortimer, N.T., Lopatto, D., Goecks, J. and Elgin, S.C. (2019). G-OnRamp: Generating genome browsers to facilitate undergraduate-driven collaborative genome annotation. BioRxiv, p.781658.

2018

Long, E., Evans, C., Chaston, J. and Udall, J.A. (2018). Genomic structural variations within five continental populations of Drosophila melanogaster. G3: Genes, Genomes, Genetics, 8(10), pp.3247-3253.

Aziz, R.K., Ackermann, H.W., Petty, N.K. and Kropinski, A.M. (2018). Essential steps in characterizing bacteriophages: Biology, taxonomy, and genome analysis. In Bacteriophages (pp. 197-215). Humana Press, New York, NY.

Gaire, R. and Wilde, H.D. (2018). Natural allelic variation in blueberry TERMINAL FLOWER 1. Plant Genetic Resources, 16(1), pp.59-67.

Stamps, B.W., Andrade, O.C., Lyon, W.J., Floyd, J.G., Nunn, H.S., Bojanowski, C.L., Crookes-Goodson, W.J. and Stevenson, B.S. (2018). Genome Sequence of a Byssochlamys sp. Strain Isolated from Fouled B20 Biodiesel. Genome Announc., 6(9), pp.e00085-18.

Weitemier, K., Straub, S.C., Fishbein, M., Bailey, C.D., Cronn, R.C. and Liston, A. (2018). The genome and transcriptome of common milkweed (Asclepias syriaca): resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae. PeerJ Preprints, 6, p.e26488v1.

2017

Kahodariya, J.H., Gajera, H.P., Golakiya, B.A., Kothari, V.V., Kheni, J.V., Sanghani, J.M., Ramani, H.R. and Garaniya, N.H. (2017). Study of orthologous gene clusters among Aspergillus species. Bull. Env. Pharmacol. Life Sci, 6, pp.115-118.

Burrows, B.A. and McCubbin, A.G. (2017). Sequencing the genomic regions flanking S-linked PvGLO sequences confirms the presence of two GLO loci, one of which lies adjacent to the style-length determinant gene CYP734A50. Plant reproduction, 30(1), pp.53-67.